Location: SLC transporters @ 65898d4880ef / Facilitated transporter / GLUT2_BG.sedml

Author:
Weiwei Ai <wai484@aucklanduni.ac.nz>
Date:
2024-10-21 14:11:01+13:00
Desc:
Modify SGLT1_BG_fast.cellml to allow users to modify test_volt and Glco in the simulation tab.
Permanent Source URI:
http://models.cellml.org/workspace/b65/rawfile/65898d4880efb52227f2860ddafb4c8cde585d47/Facilitated transporter/GLUT2_BG.sedml

<?xml version='1.0' encoding='UTF-8'?>
<sedML level="1" version="3" xmlns="http://sed-ml.org/sed-ml/level1/version3" xmlns:cellml="http://www.cellml.org/cellml/1.1#">
    <listOfModels>
        <model id="model" language="urn:sedml:language:cellml.1_1" source="GLUT2_BG.cellml"/>
    </listOfModels>
    <listOfSimulations>
        <uniformTimeCourse id="simulation1" initialTime="0" numberOfPoints="2000" outputEndTime="0.2" outputStartTime="0">
            <algorithm kisaoID="KISAO:0000019">
                <listOfAlgorithmParameters>
                    <algorithmParameter kisaoID="KISAO:0000211" value="1e-09"/>
                    <algorithmParameter kisaoID="KISAO:0000475" value="BDF"/>
                    <algorithmParameter kisaoID="KISAO:0000481" value="true"/>
                    <algorithmParameter kisaoID="KISAO:0000476" value="Newton"/>
                    <algorithmParameter kisaoID="KISAO:0000477" value="Dense"/>
                    <algorithmParameter kisaoID="KISAO:0000480" value="0"/>
                    <algorithmParameter kisaoID="KISAO:0000415" value="500"/>
                    <algorithmParameter kisaoID="KISAO:0000467" value="0"/>
                    <algorithmParameter kisaoID="KISAO:0000478" value="Banded"/>
                    <algorithmParameter kisaoID="KISAO:0000209" value="1e-09"/>
                    <algorithmParameter kisaoID="KISAO:0000479" value="0"/>
                </listOfAlgorithmParameters>
            </algorithm>
        </uniformTimeCourse>
    </listOfSimulations>
    <listOfTasks>
        <repeatedTask id="repeatedTask" range="once" resetModel="true">
            <listOfRanges>
                <vectorRange id="once">
                    <value> 1 </value>
                </vectorRange>
            </listOfRanges>
            <listOfSubTasks>
                <subTask order="1" task="task1"/>
            </listOfSubTasks>
        </repeatedTask>
        <task id="task1" modelReference="model" simulationReference="simulation1"/>
    </listOfTasks>
    <listOfDataGenerators>
        <dataGenerator id="xDataGenerator1_1">
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                <ci> xVariable1_1 </ci>
            </math>
            <listOfVariables>
                <variable id="xVariable1_1" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="yDataGenerator1_1">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> yVariable1_1 </ci>
            </math>
            <listOfVariables>
                <variable id="yVariable1_1" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='q_Ai']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="xDataGenerator1_2">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> xVariable1_2 </ci>
            </math>
            <listOfVariables>
                <variable id="xVariable1_2" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="yDataGenerator1_2">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> yVariable1_2 </ci>
            </math>
            <listOfVariables>
                <variable id="yVariable1_2" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='q_Ao']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="xDataGenerator2_1">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> xVariable2_1 </ci>
            </math>
            <listOfVariables>
                <variable id="xVariable2_1" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="yDataGenerator2_1">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> yVariable2_1 </ci>
            </math>
            <listOfVariables>
                <variable id="yVariable2_1" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='q_1']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="xDataGenerator2_2">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> xVariable2_2 </ci>
            </math>
            <listOfVariables>
                <variable id="xVariable2_2" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="yDataGenerator2_2">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> yVariable2_2 </ci>
            </math>
            <listOfVariables>
                <variable id="yVariable2_2" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='q_2']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="xDataGenerator2_3">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> xVariable2_3 </ci>
            </math>
            <listOfVariables>
                <variable id="xVariable2_3" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="yDataGenerator2_3">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> yVariable2_3 </ci>
            </math>
            <listOfVariables>
                <variable id="yVariable2_3" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='q_3']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="xDataGenerator2_4">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> xVariable2_4 </ci>
            </math>
            <listOfVariables>
                <variable id="xVariable2_4" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="yDataGenerator2_4">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> yVariable2_4 </ci>
            </math>
            <listOfVariables>
                <variable id="yVariable2_4" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='q_4']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="xDataGenerator3_1">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> xVariable3_1 </ci>
            </math>
            <listOfVariables>
                <variable id="xVariable3_1" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="yDataGenerator3_1">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> yVariable3_1 </ci>
            </math>
            <listOfVariables>
                <variable id="yVariable3_1" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='v_r1']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="xDataGenerator3_2">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> xVariable3_2 </ci>
            </math>
            <listOfVariables>
                <variable id="xVariable3_2" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="yDataGenerator3_2">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> yVariable3_2 </ci>
            </math>
            <listOfVariables>
                <variable id="yVariable3_2" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='v_r2']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="xDataGenerator3_3">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> xVariable3_3 </ci>
            </math>
            <listOfVariables>
                <variable id="xVariable3_3" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="yDataGenerator3_3">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> yVariable3_3 </ci>
            </math>
            <listOfVariables>
                <variable id="yVariable3_3" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='v_r3']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="xDataGenerator3_4">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> xVariable3_4 </ci>
            </math>
            <listOfVariables>
                <variable id="xVariable3_4" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='t']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
        <dataGenerator id="yDataGenerator3_4">
            <math xmlns="http://www.w3.org/1998/Math/MathML">
                <ci> yVariable3_4 </ci>
            </math>
            <listOfVariables>
                <variable id="yVariable3_4" target="/cellml:model/cellml:component[@name='GLUT2_BG']/cellml:variable[@name='v_r4']" taskReference="repeatedTask"/>
            </listOfVariables>
        </dataGenerator>
    </listOfDataGenerators>
    <listOfOutputs>
        <plot2D id="plot1">
            <annotation>
                <properties version="2" xmlns="http://www.opencor.ws/">
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                    <fontSize>10</fontSize>
                    <foregroundColor>#000000</foregroundColor>
                    <height>1</height>
                    <gridLines>
                        <style>dot</style>
                        <width>1</width>
                        <color>#a0a0a4</color>
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                        <fontSize>10</fontSize>
                        <visible>true</visible>
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                    <pointCoordinates>
                        <style>dash</style>
                        <width>1</width>
                        <color>#b0008080</color>
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                    <surroundingArea>
                        <backgroundColor>#f0f0f0</backgroundColor>
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                    <title/>
                    <xAxis>
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                        <logarithmicScale>false</logarithmicScale>
                        <title/>
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                        <fontSize>10</fontSize>
                        <logarithmicScale>false</logarithmicScale>
                        <title/>
                    </yAxis>
                    <zoomRegion>
                        <style>solid</style>
                        <width>1</width>
                        <color>#b0800000</color>
                        <fontColor>#ffffff</fontColor>
                        <fontSize>10</fontSize>
                        <filled>true</filled>
                        <fillColor>#30ffff00</fillColor>
                    </zoomRegion>
                </properties>
            </annotation>
            <listOfCurves>
                <curve id="curve1_1" logX="false" logY="false" xDataReference="xDataGenerator1_1" yDataReference="yDataGenerator1_1">
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                            <line>
                                <style>solid</style>
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                                <color>#0072bd</color>
                            </line>
                            <symbol>
                                <style>none</style>
                                <size>8</size>
                                <color>#0072bd</color>
                                <filled>true</filled>
                                <fillColor>#ffffff</fillColor>
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                            <title>q_Ao</title>
                            <line>
                                <style>solid</style>
                                <width>2</width>
                                <color>#d95319</color>
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                            <symbol>
                                <style>none</style>
                                <size>8</size>
                                <color>#d95319</color>
                                <filled>true</filled>
                                <fillColor>#ffffff</fillColor>
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                </curve>
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        </plot2D>
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                    <fontSize>10</fontSize>
                    <foregroundColor>#000000</foregroundColor>
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                        <color>#a0a0a4</color>
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                        <visible>true</visible>
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                    <pointCoordinates>
                        <style>dash</style>
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                        <color>#b0008080</color>
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                    </pointCoordinates>
                    <surroundingArea>
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                    <title/>
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                        <logarithmicScale>false</logarithmicScale>
                        <title/>
                    </xAxis>
                    <yAxis>
                        <fontSize>10</fontSize>
                        <logarithmicScale>false</logarithmicScale>
                        <title/>
                    </yAxis>
                    <zoomRegion>
                        <style>solid</style>
                        <width>1</width>
                        <color>#b0800000</color>
                        <fontColor>#ffffff</fontColor>
                        <fontSize>10</fontSize>
                        <filled>true</filled>
                        <fillColor>#30ffff00</fillColor>
                    </zoomRegion>
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